Research Publications

Publications 2021

  1. Abhay G, Namita D, Raju VS, Ramkumar MK, Singh MK, Bhupinder S, Gopala Krishnan S, Panwar S, Mithra SVA (2021) Genetic diversity analysis of wild and cultivated Rosa species of India using microsatellite markers and their comparison with morphology based diversity. Journal of Plant Biochemistry and Biotechnology
  2. Ambika N, Venkatraman H, Nimmy M S, Bharadwaj C, Shailesh T, Rajesh KS, Rajendra K (2021) Unraveling genetics of semi-determinacy and identification of markers for indeterminate stem growth habit in chickpea (Cicer Arietinum L.). Scientific Reports 11:21837.
  3. Anil K, Jaiwal R, Sreevathsa R, Chaudhary D, Jaiwal PK (2021) Transgenic cowpea plants expressing Bacillus thuringiensis Cry2Aa insecticidal protein imparts resistance to Maruca vitrata legume pod borer. Plant Cell Reports 40(3): 583-594.
  4. Anshuman S, Tyagi S, Saratale GD, Guzik U, Hu A, Sreevathsa R, Reddy VD, Rai V, Mulla SI (2021) A comprehensive review on the influence of light on signaling cross-talk and molecular communication against phyto-microbiome interactions. Critical Review on Biotechnology, 41(3): 370-393.
  5. Bashyal BM, Gupta AK, Singh D, Choudhary R, Aggarwal R (2021) First report of Sclerotium hydrophilum Sace causing stem rot disease of rice in North Eastern Plain Zone of India. Plant Disease 105(03):700.
  6. Begam S, Jain R, Arora A, Marwaha S (2021) Particle swarm optimization based multi-objective optimization for crop planning: A case study of Bundelkhand. Journal of the Indian Society of Agricultural Statistics 75(1), 47-57.
  7. Chakraborty K, Ray S, Vijayan J, Molla KA, Nagar R, Jena P, Mondal S, Panda BB, Shaw BP, Swain P, Chattopadhyay K, Sarkar RK (2021) Preformed aerenchyma determines the differential tolerance response under partial submergence imposed by fresh and saline water flooding in rice. Physiologia Plantarum 173(4): 1597-1615.
  8. Chatterjee M, Yadav J, Rathinam M, Mandal A, Chowdhary G, Sreevathsa R, Rao U (2021) Exogenous administration of dsRNA for the demonstration of RNAi in Maruca vitrata (lepidoptera: crambidae). 3 Biotech 11(4): 1-12.
  9. Choudhury S, Muthusamy SK, Padaria JC, Dalal M (2021) Genome-wide identification of Ran GTPase family genes from wheat (T. aestivum) and their expression profile during developmental stages and abiotic stress conditions Functional & Integrative Genomics 21 (2): 239-250.
  10. Chowrasia S, Nishad J, Pandey R, Mondal TK (2021) Oryza coarctata is a triploid plant with initial events of Cd photosynthesis evolution. Plant Science 308:110878.
  11. Chungada AS, Gahukar SJ, Akhare AA, Behere GT, Solanke AU and Patil SR (2021) DNA fingerprinting in citrus for species identification. The Pharma Innovation Journal 10(5): 306-309.
  12. Dalai D, Chakraborti M, Mondal TK (2021) The core set of sequence-tagged microsatellite sites markers between halophytic wild rice Oryza coarctata and Oryza sativa complex. Euphytica 217:4- 57.
  13. Danakumar T, Kumari J, Singh AK, Sinha SK, Pradhan AK, Sharma S, Jha SK, Bansal R, Kumar S, Jha GK, Yadav MC, Vara Prasad PV (2021) Genetic dissection of seedling root system architectural traits in a diverse panel of hexaploid wheat through multi-locus Genome-Wide Association Mapping for improving drought tolerance. International Journal of Molecular Sciences 22(13): 7188.
  14. Dharmateja P, Kumar M, Pandey R, Mandal PK, Babu P, Bainsla NK, Gaikwad KB, Tomar V, Kranthi KK, Dhar N, Ansari R (2021) Deciphering the change in root system architectural traits under limiting and non-limiting phosphorus in Indian bread wheat germplasm. PloS one 16 (10), p.e0255840.
  15. Dhatwalia D, Aminedi R, Kalia V, Veena PV, Bhattacharya R (2021) Host-mediated attenuation of gut sucrase in mustard aphid Lipaphis erysimi impaired its parthenogenetic reproduction on Indian mustard Brassica juncea. Pest Management Science 78(2):803-811.
  16. Gayatri JK, Sinha SK, Roy P, Mandal P K (2021) Comparative analysis of GS2 and Fd-GOGAT genes in cultivated wheat and their progenitors under N stress. Plant Molecular Biology Reporter 39:520–545.
  17. Gayatri VK, Sinha SK, Roy P, Mandal PK (2021) Molecular characterization of GS2 and Fd GOGAT homeologues and their biased response to nitrogen stress in bread wheat (Triticum aestivum L.). Journal of Plant Growth Regulation 1-15.
  18. Gupta P, Rai R, Vasudev S, Yadava DK, Dash PK (2021) Ex-foliar application of glycine betaine and its impact on protein, carbohydrates and induction of ROS scavenging system during drought stress in flax (Linum usitatissimum). Journal of Biotechnology 20; 337:80-89.
  19. Hada A, Patil BL, Akansha B, Karthik K, Savithramma DK, Bheema P, Sreevathsa R, Rao U (2021) Micro RNA‐induced gene silencing strategy for the delivery of siRNAs targeting Meloidogyne incognita in a model plant Nicotiana benthamiana. Pest Manag Science. 77: 3396–3405.
  20. Jain P, Hussian S, Nishad J, Dubey H, Bisht DS, Sharma TR, Mondal TK. (2021) Identification and functional prediction of long non-coding RNAs of rice (Oryza sativa L.) at reproductive stage under salinity stress. Molecular Biology Reports 48(3):2261-71.
  21. Jayaraman K, Venkat Raman K, Sevanthi AM, Sivakumar SR , Gayatri, Mohapatra T, Mandal PK (2021) Stress-inducible expression of chalcone isomerase2 gene improves accumulation of flavonoids and imparts enhanced abiotic stress tolerance to rice. Environmental and Experimental Botany 190: 104582.
  22. Joshi D, Butola A, Kanade SR, Prasad DK, Mithra SA, Singh NK, Bisht DS, Mehta DS. (2021) Label-free non-invasive classification of rice seeds using optical coherence tomography assisted with deep neural network. Optics and Laser Technology 1,137:106861.
  23. Karikalan J, Amitha Mithra SV, Sivakumar SR, Mandal PK (2021) Efficient and rapid method for the screening of transgenic rice plants. International Journal of Botany Studies 6 (2): 44-47.
  24. Karikalan J, Amitha MS, Sivakumar SR, Kiran BP, Mandal PK (2021) Morpho-physiological and biochemical evaluation of two Indica rice (Oryza sativa L) cultivars under abiotic stresses at the seedling stage. Indian Research Journal of Genetics and Biotechnology 13 (1): 10-27.
  25. Karikalan, J, Venkat RK, Amitha Mithra SV, Sivakumar SR, Gayatri, Viswanathan C, Mohapatra T, Mandal PK (2021) Stress-inducible expression of chalcone isomerase2 gene improves accumulation of flavonoids and imparts enhanced abiotic stress tolerance to rice. Environmental and Experimental Botany 190:104582.
  26. Karthik K, Jyotsana N, Maniraj R, Navinder S, Rohini S (2021) Exploitation of novel Bt ICPs for the management of Helicoverpa armigera (Hübner) in cotton (Gossypium hirsutum L.): A transgenic approach. Frontiers in Microbiology 12: 661212.
  27. Karthik K, Tyagi S, Mukherji S, Rai R, Singh NK, Sreevathsa R and Dash PK (2021) An apical meristem-targeted in planta transformation method for the development of transgenics in Flax (Linum usitatissimum): optimization and validation. Frontiers in Plant Science 11:562056.
  28. Kashyap AS, Manzar N, Rajawat MVS, Kesharwani AK, Singh RP, Dubey SC, Pattanayak D, Dhar S, Lal SK, Singh D (2021) Screening and biocontrol potential of Rhizobacteria native to Gangetic plains and hilly regions to induce systemic resistance and promote plant growth in chilli against bacterial wilt disease. Plants 10: 2125.
  29. Kattupalli D, Barbadikar KM, Balija V, Ballichatla S, Padmakumari AP, Saxena S, Gaikwad K, Yerram S, Kokku P, Madhav MS (2021) The draft genome of Yellow Stem Borer, an agriculturally important pest, provides molecular insights into its biology, development and specificity towards rice for infestation. Insects 19:12 (6):563.
  30. Krishnatreya DB, Baruah PM Dowarah B….Mondal TK (2021) Genome-wide identification, evolutionary relationship and expression analysis of AGO, DCL and RDR family genes in tea. Scientific Reports 11: 8679.
  31. Kuldeep K, Srivastava H, Das A, Tribhuvan KU, Durgesh K, Joshi R, Amitha Mithra SV, Jain PK, Singh NK, Gaikwad K (2021) Identification and characterization of MADS box gene family in pigeonpea for their role during floral transition. 3 Biotech 11(2)108.
  32. Kumar R, Harikrishna H, Ghimire OP, Barman D, Chinnusamy V, Singh PK, Padaria JC, Suman A, Arora A (2021) Stay-green trait ameliorates combined heat and drought stress in wheat. Indian Journal of Agricultural Sciences 91 (4).
  33. Kumar RR, Dubey K, Arora K, Dalal M, Rai GK, Mishra D, Chaturvedi KK, Rai A, Kumar SN, Singh B, Viswanathan C, Praveen S (2021) Characterizing the putative mitogen-activated protein kinase (MAPK) and their protective role in oxidative stress tolerance and carbon assimilation in wheat under terminal heat stress. Biotechnology Reports 29: March, e00597.
  34. Kumar S, Dhar S, Barthakur S, Rajawat MVS, Kochewad SA, Kumar S, Kumar D Meena LR (2021) Farmyard manure as K-fertilizer modulates soil biological activities and yield of wheat using the integrated fertilization approach. Frontiers in Environmental Science 9:764489. doi: 10.3389/fenvs.2021.764489.
  35. Kumar V, Jain P, Venkadesan S, Karkute SG, Bhati J, Abdin MZ, Sevanthi AM, Mishra DC, Chaturvedi KK, Rai A, Sharma TR, Solanke AU (2021) Understanding rice-Magnaporthe oryzae interaction in resistant and susceptible cultivars of rice under panicle blast infection using a time-course transcriptome analysis. Genes 12 (2):301.
  36. Kumar VC, Gadag RN, Mukri, G, Singh C, Bhat JS, Kumari J, Singh RK, Gupta NC (2021) Molecular characterization and multi-environmental evaluation of field corn (Zea mays) inbreds for kernel traits. Indian Journal of Agricultural Sciences 91 (11): 1622-6.
  37. Mir ZA, Ali S, Singh A, Yadav P, Tyagi A, Chaturon GDG, Grover A (2021) In silico analysis and overexpression of chitinase class IV gene in Brassica juncea improves resistance against Alternaria brassicae. Industrial Crops and Products 169:1,113555.
  38. Móring A, Hooda S, Raghuram N, Adhya TK, Ahmad A, Bandyopadhyay SK, ... Mandal PK……Sutton MA (2021) Nitrogen challenges and opportunities for agricultural and environmental science in India. Frontiers in Sustainable Food Systems, 5, 13.
  39. MsangoSoko K, Bhattacharya R, Ramakrishnan B, Sharma K, Subramanian S (2021) Cellulolytic activity of gut bacteria isolated from the eri silkworm larvae, Samia ricini,(Lepidoptera: Saturniidae). International Journal of Tropical Insect Science 41:2785–2794.
  40. Mukesh SS, Tara SC, Barthakur S, Singh SP, Bharadwaj C, Soumya SL (2021) Differential modulation of heat-inducible genes across diverse genotypes and molecular cloning of a sHSP from pearl millet (Pennisetum glaucum). Frontiers in Plant Science 12: 659893.
  41. Muthusamy V, Dutta S, Chhabra R, Baveja A, Zunjare RU, Mondal TK, Yadava DK, Hossain F (2021) Low expression of carotenoids cleavage dioxygenase 1 (ccd1) gene improves the retention of provitamin-A in maize grains during storage. Molecular Genetics and Genomics 296: 141-153.
  42. Naguib WB, Divte PR, Chandra A, Sathee L, Singh B, Mandal PK, Anand A (2021) Raffinose accumulation and preferential allocation of carbon (14C) to developing leaves impart salinity tolerance in sugar beet. Physiologia Plantarum 173:1421-1433.
  43. Neeraj K, Soren KR, Bharadwaj C, Sneha PR, Abhishek KS, Madan P, Manish R, Kuldeep K, Patil BS, Anjali S, Nimmy MS, Kadambot S, Rajeev KV (2021) Genome-wide transcriptome analysis and physiological variation modulate gene regulatory networks acclimating salinity tolerance in chickpea. Environmental and Experimental Botany 187: 104478.
  44. Panzade KP, Vishwakarma H, Awasthi OP, Padaria JC (2021) Molecular cloning and in silico analysis of heat stress responsive gene ClpB1 from Ziziphus nummularia genotypes. Indian Journal of Experimental Biology 59 (05): 316-327.
  45. Pothiraj G, Hussain Z, Singh AK, Solanke AU, Aggarwal R, Ramesh R, Shanmugam V (2021) Characterization of Fusarium spp. inciting vascular wilt of tomato and its management by a Chaetomium-based biocontrol consortium. Frontiers in Plant Science 12:748013.
  46. Pradhan S, Singh SK, Srivastav M, Prakash J, Lal SK, Padaria JC, Goswami AK, Maurya NK (2021) Poly ethylene glycol mediated in vitro screening and physico-biochemical changes induced in mango callus due to moisture stress. Plant Cell, Tissue and Organ Culture 145 (1):155-172.
  47. Prashantha ST, Bashyal BM, Krishnan SG, Dubey H, Solanke AU, Prakash G, Aggarwal R (2021) Identification and expression analysis of pathogenicity-related genes of Rhizoctonia solani anastomosis groups infecting rice. 3 Biotech 11(8): 394.
  48. Priyadarshini P, Kohli D, Yadav S, Srinivasa N, Bharadwaj C, Anjoy P, Gaikwad K, Jain PK (2021) Quantitative detection of pathogen load of Fusarium oxysporum f.sp. ciceris infected wilt resistant and susceptible genotypes of chickpea using intergenic spacer region-based marker. Physiological and Molecular Plant Pathology 114: 101622.
  49. Raipuria R, Kataria S, Watts A, Jain M (2021) Magneto-priming promotes nitric oxide via nitric oxide synthase to ameliorate the UV-B stress during germination of soybean seedlings. Journal of Photochemistry and Photobiology 220: 11221.
  50. Raiya R, Hegde V, Krishnan V, Bharadwaj C, Tripathi S and Jain PK (2021) Genetics of lodging resistance in chickpea (Cicer arietinum L). Euphytica 217:83.
  51. Rajput VD, Singh A, Minkina T, Rawat S, Mandzhieva S, Sushkova S, Shuvaeva V, Nazarenko O, Rajput P, Komariah, Verma KK, Singh AK, Rao M, Upadhyay SK (2021) Nano-enabled products: challenges and opportunities for sustainable agriculture. Plants. 10:2727.
  52. Ramakrishna G, Kaur P, Singh A, Yadav SS, Sharma S, Singh NK, Gaikwad K (2021) Comparative transcriptome analyses revealed different heat stress responses in pigeonpea (Cajanus cajan) and its crop wild relatives. Plant Cell Reports 40: 881–898.
  53. Rathinam M, Marimuthu SK, Tyagi S, Kesiraju K, Alagiamanavalan LP, Rao U, Sreevathsa R (2021) Characterization and in planta validation of a CHI4 chitinase from Cajanus platycarpus (Benth.) Maesen for its efficacy against pod borer, Helicoverpa armigera (Hübner). Pest Management Science 77(5), 2337-2349.
  54. Rawal HC, Ali S, Mondal TK (2021) miRPreM and tiRPreM: Improved methodologies for the prediction of miRNAs and tRNA-induced small non-coding RNAs for model and non-model organisms. Briefings in Bioinformatics 3: 1–11.
  55. Rawal HC, Angadi UB, Mondal TK (2021) TEnGExA: an R package based tool for tissue enrichment and gene expression analysis. Briefing in Bioinformatics 20, 22 (3).
  56. Rawal HC, Borchetia S, Bera B, Soundararajan S, Ilango RVJ, Barooah AK, Sharma TR, Singh NK, Mondal TK (2021) Comparative analysis of chloroplast genomes indicated different origin for Indian tea (Camellia assamica cv TV1) as compared to Chinese tea. Scientific Reports 8;11(1):110.
  57. Santhi CKV, Rajesh MK, Ramesh SV, Muralikrishna KS, Gangaraj KP, Gupta P, Dash PK. (2021) Genome-wide exploration of auxin response factors (ARFs) and their expression dynamics in response to abiotic stresses and growth regulators in coconut (Cocos nucifera L.). Plant Gene 28:100344.
  58. Sevanthi AM, Sinha SK, SureshKumar V, Rani M, Saini MR, Kumari S, Kaushik M, Prakash C, Venkatesh K, Singh GP, Mohapatra T, Mandal PK (2021) Integration of dual stress transcriptomes and major QTLs from a pair of genotypes contrasting for drought and chronic nitrogen starvation identifies key stress responsive genes in rice. Rice 14-49.
  59. Sharma S, Tyagi A, Srivastava H, Ramakrishna G, Sharma P, Sevanthi AM, Solanke AU, Sharma R, Singh NK, Sharma TR, Gaikwad K (2021) Exploring the edible gum (galactomannan) biosynthesis and its regulation during pod developmental stages in clusterbean using comparative transcriptomic approach. Scientific Reports 17, 11(1):4000.
  60. Singh BK, Ramkumar MK, Dalal M, Singh A, Solanke AU, Singh NK, Sevanthi AM (2021) Allele mining for a drought responsive gene DRO1 determining root growth angle in donors of drought tolerance in rice (Oryza sativa L.). Physiology Molecular Biology of Plants 27 (3):523-34.
  61. Singh J, Aggarwal R, Bashyal BM, Darshan K, Parmar P, Saharan MS, Hussain Z, Solanke AU (2021) Transcriptome reprograming of tomato orchestrate the hormone signaling network of systemic resistance induced by Chaetomium globosum. Frontiers in Plant Science 12:721193.
  62. Singh L, Kohli D, Gaikwad K, Kansal R, Dahuja A, Paul V, Bharadwaj C, Jain PK (2021) Effect of drought stress on morphological, biochemical, physiological traits and expression analysis of microRNAs in drought-tolerant and sensitive genotypes of chickpea. Indian Journal of Genetics and Plant Breeding. 81(2):266-276.
  63. Singh L, Nanjundan J, Singh KH, Sharma D, Parmar N, Watts A, Jain R, Thakur AK (2021) Development of a set of SSR markers for characterization of Indian mustard germplasm and varieties. Journal of Plant Biochemistry and Biotechnology,
  64. Singh N, Mansoori A, Jiwani G, Solanke AU, Kumar R, Kumar A (2021) Evaluation of antioxidant and antimicrobial potential of Thespesia lampas root extracts. Journal of Experimental Biology and Agricultural Sciences 9(1): 87-99.
  65. Singh N, Mansoori A, Jiwani G, Solanke AU, Thakur TK, Kumar R, Chaurasiya M, Kumar A (2021) Antioxidant and antimicrobial study of Schefflera vinosa leaves crude extracts against rice pathogens. Arabian Journal of Chemistry 14:103243.
  66. Singh S, Bhatia R, Kumar R, Behera TK, Kumari K, Pramanik A, Ghemeray H, Sharma K, Bhattacharya R, Dey SS (2021) Elucidating mitochondrial DNA-markers of Ogura-based CMS lines in Indian cauliflowers (Brassica oleracea var. botrytis L.) and their floral abnormalities due to diversity in cyto-nuclear interactions. Frontiers in Plant Science 12: 631489.
  67. Singh S, Chopperla R, Shingote P, Chhapekar SS, Deshmukh R, Khan S, Padaria JC, Sharma TR, Solanke AU (2021) Overexpression of EcDREB2A transcription factor from finger millet in tobacco enhances tolerance to heat stress through ROS scavenging. Journal of Biotechnology 336: 10-24.
  68. Sivalingam PN, Mahajan MM, Satheesh V, Chauhan S, Changal H, Gurjar K, Singh D, Bhan C, Sivalingam A, Marathe A, Ram C, Dokka N, More TA, Padaria JC, Bhat KV, Mohapatra T (2021) Distinct morpho-physiological and biochemical features of arid and hyper-arid ecotypes of Ziziphus nummularia under drought suggest its higher tolerance compared with semi-arid ecotype. Tree Physiology 41 (11):2063-2081.
  69. Uttarayan D, Mishra GP, Harsh KD, Dwijesh CM, Tejas B, Anirban R, Jyotika B, Priti, Aski M , Ranjeet RK, Amit KS, Atul K, SK Sinha, Chaurasia S, Shelly P, Ramakrishnan MN (2021) Comparative RNA-Seq analysis unfolds a complex regulatory network imparting yellow mosaic disease resistance in mungbean (Vigna radiata L.). PLoS ONE. 12;16(1):e0244593.
  70. Vasupalli N, Kumar V, Bhattacharya R, Bhat SR (2021) Analysis of mitochondrial recombination in the male sterile Brassica juncea cybrid Og1 and identification of the molecular basis of fertility reversion. Plant Molecular Biology 106 (1-2):109-122.
  71. Venkatesh I, Robin G, Firoz H, Kumar A, Rashmi A, Mandal PK (2021) Identification and confirmation of physiological race (s) of Bipolaris maydis causing maydis leaf blight disease of maize in India. The Indian Journal of Agricultural Sciences 91 (4): 613-618.
  72. Vishwanath KS, Purakayastha TJ, Datta SP, Rosin KG, Mahapatra P, Sinha SK (2021) Resistance and resilience of soil fluorescein diacetate activity against abiotic stress, Indian Journal of Agricultural Sciences 91(80):1180-84.
  73. Wang L, Kaya HB, Zhang N, Rai R, Matthew RW, Carpenter SCD, Read AC, Martin F, Fei Z, Leach JE, Martin GB, Bogdanove AJ (2021) Spelling changes and fluorescent tagging with prime editing vectors for plants. Frontiers in Genome editing 3: 617553.